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Python – Predicting multilabel data with sklearn - iTecNote According to the docs, the OneVsRest classifier supports multilabel classification: ... Multioutput target data is not supported with label binarization. preprocessing/label.py · stream/scikit-learn - Gemfury self.y_type_ = type_of_target(y) if 'multioutput' in self.y_type_: raise ValueError("Multioutput target data is not supported with " "label binarization") ... Multi output target data is not supported with label binarization Jun 27, 2018 ... The problem is in your y_train . Check that it either has a shape=(?, 1) or shape=(?) . Multioutput target data is not supported with label binarization